RNA Bioinformatics

Dr. Wong will give a web seminar on August 9 for Exon Array analysis.

PS: I am adding new features to the probe selection algorithm. We will allow users to initiate iterative probe selection from a pre-defined probe list. This could be probes that are selected from a high-quality and diverse exon array dataset, or probes that do not have cross-match to any other transcripts. We will provide such pre-defined probe lists from our GeneBASE website soon.

Found this python script for quick computation of overlapping features in genomic interval databases. The script can be downloaded from the author's FTP site indicated in this paper. It's a small script and very easy to use. It works with standard GFF format.