« Dr. Wing Wong's web seminar on Exon Array analysis | Main | Alternative splicing differences between humans and chimpanzees »

Efficient Genomic Interval Overlap Calculation

Found this python script for quick computation of overlapping features in genomic interval databases. The script can be downloaded from the author's FTP site indicated in this paper. It's a small script and very easy to use. It works with standard GFF format.

TrackBack

TrackBack URL for this entry:
http://www.rnabioinformatics.com/blog/mt-tb.cgi/39

Post a comment

(If you haven't left a comment here before, you may need to be approved by the site owner before your comment will appear. Until then, it won't appear on the entry. Thanks for waiting.)

About

This page contains a single entry from the blog posted on August 11, 2007 12:08 PM.

The previous post in this blog was Dr. Wing Wong's web seminar on Exon Array analysis.

The next post in this blog is Alternative splicing differences between humans and chimpanzees .

Many more can be found on the main index page or by looking through the archives.

Powered by
Movable Type 3.31